The Rknots package enables the topological analysis of knots and links with a particular focus on biological polymers like proteins.
If you are using Rknots for your analysis, please cite
- Comoglio F, Rinaldi M (2011) A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins. PLoS ONE 6(4): e18693. doi:10.1371/journal.pone.0018693
- Comoglio F, Rinaldi M. (2012) Rknots: topological analysis of knotted biopolymers with R. Bioinformatics 28(10): 1400-1. doi: 10.1093/bioinformatics/bts160
Should you have any question or need support with your analysis, feel free to contact me at firstname.lastname@example.org